BIOTA of NEW ZEALAND

Hartill, W.F.T.

has host

Hartill, W.F.T. (1987)

has host

Hartill, W.F.T. (1991)

has host

Hartill, W.F.T.; Sale, P.R.; Sawden, D.

has host

Johnston, P.R.; McKenzie, E.H.C. (1982)

has host

Ulex europaeus L.

Johnston, P.R.; Parkes, S.L.

has host

Cytisus scoparius (L.) Link

Johnston, P.R.; Parkes, S.L.; Broadhurst, P.G. (1995)

has host

Pinus radiata D.Don

McCarthy, J.K.; Hood, I.A. et al. (2010)

has host

Nothofagus menziesii (Hook.f.) Oerst.

McKenzie, E.H.C.; Buchanan, P.K.; Johnston, P.R. (2000)

has host

Corynocarpus laevigatus J.R.Forst. & G.Forst.

McKenzie, E.H.C.; Johnston, P.R. (1999)

has host

Pinus contorta Loudon

Miller, J.T.; Ecroyd, C.E. (1987)

has host

Larix decidua Mill.

Miller, J.T.; Knowles, F.B. (1988)

has host

Pseudotsuga menziesii (Mirb.) Franco

Miller, J.T.; Knowles, F.B. (1994)

has host

Larix decidua Mill.

Pennycook, S.R. (1989)

has host

Trifolium repens L.

Skipp, R.A.; Christensen, M.J. (1982)

has host

Trifolium repens L.

Skipp, R.A.; Christensen, M.J. (1983)

has host

Trifolium repens L.

Skipp, R.A.; Watson, R.N. (1987)

has host

Populus

Spiers, A.G.

has host

Verberne, H.; Tomkins, A.; East, R.

has host

Berberis glaucocarpa Stapf

Waipara, N.W.; Smith, L.A. et al. (2005)

has host

Lantana camara L.

Waipara, N.W.; Winks, C.J. et al. (2009)

has host

Lonicera japonica Thunb.

Waipara, N.W.; Winks, C.J.; Smith, L.A.; Wilkie, J.P. (2005)

isolated from

Actinidia deliciosa (A.Chev.) C.F.Liang & A.R.Ferguson

isolated from

Agathis australis (D.Don) Lindl.

isolated from

Asparagus officinalis L.

isolated from

Beilschmiedia tarairi (A.Cunn.) Kirk

isolated from

Berberis darwinii Hook.

ICMP (4 records from [Not available].)

isolated from

Cytisus

isolated from

Cytisus scoparius (L.) Link

ICMP (3 records from [Not available].)

isolated from

Dianella

isolated from

Hylocereus undatus

isolated from

Lonicera

isolated from

Malus ×domestica Borkh.

isolated from

Metrosideros polymorpha

ICMP (5 records from [Not available].)

isolated from

Nandina domestica Thunb.

isolated from

Nothofagus fusca (Hook.f.) Oerst.

isolated from

Nothofagus menziesii (Hook.f.) Oerst.

ICMP (6 records from [Not available].)

isolated from

Ostrya carpinifolia Scop.

isolated from

Peraxilla colensoi (Hook.f.) Tiegh. 1894

isolated from

Ranunculus acris L.

ICMP (8 records from [Not available].)

isolated from

Robinia

isolated from

Robinia pseudoacacia L.

ICMP (3 records from [Not available].)

isolated from

Solanum betaceum Cav.

isolated from

Sophora longicarinata

isolated from

Sophora microphylla Aiton

isolated from

Tradescantia fluminensis

ICMP (2 records from [Not available].)

isolated from

Ulex europaeus L.

isolated from

has host

Actinidia arguta

has host

Actinidia chinensis Planch.

has host

Actinidia deliciosa (A.Chev.) C.F.Liang & A.R.Ferguson

PDD (67 records from [Not available].)

has host

Agathis australis (D.Don) Lindl.

has host

Albizia julibrissin Durazz.

has host

Artocarpus altilis (Parkins.) Fosb.

has host

Bambusa

has host

Berberis

has host

Bilbergia J.C. Wendl.

has host

Boronia

has host

Brachyglottis repanda J.R.Forst. & G.Forst.

has host

Canna

has host

Capsicum

has host

Carica papaya L.

has host

Castanea

has host

Casuarina

has host

Chamaecyparis lawsoniana (Murray) Parl.

has host

Citrullus lanatus (Thunb.) Matsum. & Nakai

has host

Citrus

has host

Citrus ×limon (L.) Burm.f.

has host

Citrus ×paradisi

has host

Coprosma

has host

Coprosma australis

has host

Coprosma rhamnoides A.Cunn.

has host

Corynocarpus laevigatus J.R.Forst. & G.Forst.

has host

Cupressus

has host

Cyphomandra betacea (Cav.) Sendtn.

has host

Diospyros kaki L.f.

PDD (4 records from [Not available].)

has host

Elaeagnus japonica

has host

Elaeis guineensis Jacq.

has host

Erica carnea L.

PDD (4 records from [Not available].)

has host

Fagus sylvatica L.

has host

Fuchsia excorticata (J.R.Forst. & G.Forst.) L.f.

has host

Glycine max (L.) Merr.

has host

Guettarda speciosa

has host

Hakea

has host

Hibiscus sabdariffa

has host

Ileostylus micranthus (Hook.f.) Tiegh. 1894

has host

Ilex

has host

Ipomoea batatas (L.) Lam.

has host

Lupinus

has host

Lupinus angustifolius L.

has host

Lupinus arboreus Sims

has host

Malus ×domestica Borkh.

has host

Malus sylvestris

has host

Medicago sativa L.

has host

Metrosideros excelsa Gaertn.

has host

Musa

has host

Nandina domestica Thunb.

has host

Neopanax laetus (Kirk) Allan 1961

has host

Nothofagus menziesii (Hook.f.) Oerst.

has host

Olearia paniculata (J.R.Forst. & G.Forst.) Druce

has host

Pandanus Parkinson 1773

has host

Passiflora

has host

Passiflora antioquiensis H.Karst. 1859

has host

Passiflora edulis Sims

has host

Passiflora mixta L.f. 1781

has host

Passiflora mollissima (Kunth) L.H.Bailey

has host

has host

Physalis peruviana L.

has host

Phytolacca L. 1753

has host

Pinus radiata D.Don

has host

Poncirus trifoliata (L.) Raf.

has host

Populus

has host

Pseudotsuga menziesii (Mirb.) Franco

has host

Pseudotsuga taxifolia (Lamb.) Britton 1889

has host

Psidium guajava L.

has host

Pyrus pyrifolia (Burm.f.) Nakai

has host

Quercus ilex L.

has host

Quercus robur L.

has host

Rhopalostylis sapida H.Wendl. & Drude

has host

Rosa

has host

Solanum

has host

Solanum nigrum L.

has host

Sonchus

has host

Sophora

has host

Sophora longicarinata

has host

Sophora microphylla Aiton

has host

Tecoma

has host

Tilia

has host

Ulex europaeus L.

has host

Umbelliferae

has host

Vaccinium

has host

has host

Viburnum

has host

Vitis L. 1753

PDD (4 records from [Not available].)

has host

Vitis vinifera L.

has host

Wisteria

is host of

Doratomyces stemonitis (Pers.) F.J. Morton & G. Sm. 1963

is host of

Nectria vilior Starbäck 1899

is host of

Nectria wegeliniana (Rehm) Höhn. 1905

is host of

Nectriopsis septofusidiae Samuels 1988

Wijayawardene, NN, Hyde KD, Al-Ani LKT, Tedersoo L, Haelewaters, D, et al. (2020)

Descriptions

Hilário, Sandra; Santos, Liliana; Phillips, Alan J.L.; Alves, Artur 2021: Caveats of the internal transcribed spacer region as a barcode to resolve species boundaries in Diaporthe. Fungal Biology 126(1): 54-74.

Diaporthe Nitschke 1870

Notes

Species in Diaporthe are largely reported as important plant pathogens. Identification of species in this genus has been complemented by morphological and molecular features. However, one important factor delaying this process is the struggle to formulate robust species concepts to create adequate international phytosanitary measures. Regardless of the wide use of the internal transcribed spacer (ITS) rDNA region, established as the primary DNA barcode for fungi, the tendency for intraspecific variation has been reported, misleading interpretation of phylogenetic analyses. Therefore, the present study aimed to illustrate, using specific examples, how the ITS region may be problematic for species delimitation. We showed that the ITS region is highly variable, with strains ofDiaporthe malorum and Diaporthe novem falling into more than one clade, which if analyzed on their own, would be likely recognized as distinct taxa. Divergent ITS paralogs were also proven to coexist within the genome of D. novem. We also suggest that ITS may have escaped from concerted evolution or has undergone a duplication event. Furthermore,this study reports for the first time the existence of a putative hybrid in the genus Diaporthe. Our findings offer new clues towards the intraspecific and intragenomic variation in the ITS region, raising questions about its value for barcoding, i.e., identifying species in the genus Diaporthe. Therefore, we recommend that the ITS region be analyzed cautiously and always compared for congruence prior to description of novel taxa.

Taxonomic concepts

Name

Cited name

Reference

Preferred name

Parent name

Allantoporthe Petr. 1921

Allantoporthe Petr. 1921

Eriksson, O.E. (2009)

Allantoporthe Petr. 1921

Allantoporthe Petr.

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

Brook, P.J.

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

Brook, P.J. (1992)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Gomes, R.R.; Glienke, C. et al. (2013)

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

Hawthorne, B.T.; Rees-George, J.; Samuels, G.J. (1982)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Hilário, Sandra; Santos, Liliana; Phillips, Alan J.L.; Alves, Artur (2021)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Johnston, P.R.; Johansen, R.B. et al. (2012)

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

Kirk, P.M.; Cannon, P.F.; David, J.C.; Stalpers, J.A. (2001)

Kirk, P.M.; Cannon, P.F.; Minter, D.W.; Stalpers, J.A. (2008)

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

Kirk, P.M.; Cannon, P.F.; Minter, D.W.; Stalpers, J.A. (2008-)

Diaporthe Nitschke 1870

Diaporthe Nitschke

Diaporthaceae Höhn. ex Wehm. 1927 [1926]

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

Manning, M.A.; Lallu, N. (1997)

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

McKenzie, E.H.C.; Buchanan, P.K.; Johnston, P.R. (2002)

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

Pennycook, S.R. (1989)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Pereira, D.S.; Phillips, A.J.L. (2024)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Pereira, Diana S.; Hilário, Sandra; Gonçalves, Micael F. M.; Phillips, Alan J. L. (2023)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Rossman, A.Y.; Adams, G.C. et al. (2015)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Thompson, S.M.; Tan, Y.P. et al. (2015)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Udayanga, D.; Liu, X. et al. (2012)

Diaporthe Nitschke 1870

Diaporthe Nitschke (1870)

Waipara, N.W.; Smith, L.A. et al. (2005)

Diaporthe Nitschke 1870

Diaporthe Nitschke 1870

Wijayawardene, NN, Hyde KD, Al-Ani LKT, Tedersoo L, Haelewaters, D, et al. (2020)

Diaporthopsis Fabre

Gomes, R.R.; Glienke, C. et al. (2013)

Diaporthe Nitschke 1870

Kirk, P.M.; Cannon, P.F.; David, J.C.; Stalpers, J.A. (2001)

Diaporthopsis Fabre (1883)

Kirk, P.M.; Cannon, P.F.; Minter, D.W.; Stalpers, J.A. (2008)

Diaporthopsis Fabre (1883)

Kirk, P.M.; Cannon, P.F.; Minter, D.W.; Stalpers, J.A. (2008-)

Diaporthopsis Fabre

Diaporthaceae Höhn. ex Wehm. 1927 [1926]

Phomopsis (Sacc.) Bubák (1905)

Anonymous (2004)

Phomopsis (Sacc.) Bubák (1905)

Anonymous (2005)

Phomopsis (Sacc.) Bubák 1905

Braithwaite, M.; Inglis, C. et al. (2007)

Phomopsis (Sacc.) Bubák (1905)

Bubák, F.; Kabát, J.E. (1905)

Phomopsis (Sacc.) Bubák (1905)

Dick, M.A. (2000)

Phomopsis (Sacc.) Bubák (1905)

Falloon, R.E. (1985)

Phomopsis (Sacc.) Bubák (1905)

Gilmour, J.W. (1965)

Phomopsis (Sacc.) Bubák (1905)

Gilmour, J.W. (1966)

Phomopsis (Sacc.) Bubák (1905)

Gilmour, J.W.; Lancaster, M.E. (1955)

Phomopsis (Sacc.) Bubák (1905)

Goh, H.H.; Lyons, S.N.; Mowat, A.W.

Phomopsis (Sacc.) Bubák (1905)

Hartill, W.F.T.

Phomopsis (Sacc.) Bubák (1905)

Hartill, W.F.T. (1987)

Phomopsis (Sacc.) Bubák (1905)

Hartill, W.F.T. (1991)

Phomopsis (Sacc.) Bubák (1905)

Hartill, W.F.T.; Sale, P.R.; Sawden, D.

Phomopsis (Sacc.) Bubák (1905)

Johnston, P.R. (1998)

Phomopsis (Sacc.) Bubák (1905)

Johnston, P.R.; McKenzie, E.H.C. (1982)

Phomopsis (Sacc.) Bubák (1905)

Johnston, P.R.; Parkes, S.L.

Johnston, P.R.; Parkes, S.L.; Broadhurst, P.G. (1995)

Phomopsis (Sacc.) Bubák (1905)

Kirk, P.M.; Cannon, P.F.; David, J.C.; Stalpers, J.A. (2001)

Phomopsis (Sacc.) Bubák (1905)

Kirk, P.M.; Cannon, P.F.; Minter, D.W.; Stalpers, J.A. (2008)

Phomopsis (Sacc.) Bubák (1905)

Kirk, P.M.; Cannon, P.F.; Minter, D.W.; Stalpers, J.A. (2008-)

Phomopsis (Sacc.) Bubák

Diaporthaceae Höhn. ex Wehm. 1927 [1926]

Phomopsis (Sacc.) Bubák (1905)

McCarthy, J.K.; Hood, I.A. et al. (2010)

McKenzie, E.H.C.; Buchanan, P.K.; Johnston, P.R. (2000)

Phomopsis (Sacc.) Bubák (1905)

Phomopsis (Sacc.) Bubák (1905)

McKenzie, E.H.C.; Johnston, P.R. (1999)

Phomopsis (Sacc.) Bubák (1905)

Miller, J.T.; Ecroyd, C.E. (1987)

Phomopsis (Sacc.) Bubák (1905)

Miller, J.T.; Knowles, F.B. (1988)

Phomopsis (Sacc.) Bubák (1905)

Miller, J.T.; Knowles, F.B. (1994)

Phomopsis (Sacc.) Bubák (1905)

Pennycook, S.R. (1989)

Phomopsis (Sacc.) Bubák 1905

Rossman, A.Y.; Adams, G.C. et al. (2015)

Diaporthe Nitschke 1870

Phomopsis (Sacc.) Bubák (1905)

Skipp, R.A.; Christensen, M.J. (1982)

Phomopsis (Sacc.) Bubák (1905)

Skipp, R.A.; Christensen, M.J. (1983)

Phomopsis (Sacc.) Bubák (1905)

Skipp, R.A.; Watson, R.N. (1987)

Phomopsis (Sacc.) Bubák (1905)

Spiers, A.G.

Phomopsis (Sacc.) Bubák

Udayanga, D.; Liu, X. et al. (2012)

Phomopsis (Sacc.) Bubák (1905)

Verberne, H.; Tomkins, A.; East, R.

Phomopsis (Sacc.) Bubák (1905)

Waipara, N.W.; Smith, L.A. et al. (2005)

Phomopsis (Sacc.) Bubák 1905

Waipara, N.W.; Winks, C.J. et al. (2009)

Waipara, N.W.; Winks, C.J.; Smith, L.A.; Wilkie, J.P. (2005)

Phomopsis (Sacc.) Bubák 1905

Global name resources

Index Fungorum - Diaporthe

MycoBank - Diaporthe Nitschke 1870

Collections

Determined name

Country

Geographic region

Indicative databased records

Diaporthe Nitschke 1870

[Not available]

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