Sawana, Amandeep; Adeolu, Mobolaji; Gupta, Radhey S. 2014: Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. Frontiers in Genetics 5(429)
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Details
Sawana, Amandeep; Adeolu, Mobolaji; Gupta, Radhey S. 2014: Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. Frontiers in Genetics 5(429)
10.3389/fgene.2014.00429
Article
Taxonomic concepts
Burkholderia caledonica Coenye et al.
Burkholderia fungorum Coenye et al.
Burkholderia ginsengisoli Kim et al.
Burkholderia phenazinium (Bell and Turner 1973) Viallard et al. 1998
Burkholderia phytofirmans Sessitsch et al. 2005
Burkholderia sartisoli Vanlaere et al.
Burkholderia sediminicola Lim et al. 2008
Burkholderia terricola Goris et al. 2003
Burkholderia tropica Reis et al.
Burkholderia xenovorans Goris et al.
Burkholderia Yabuuchi et al. 1993
Paraburkholderia caledonica (Coenye et al. 2001) Sawana et al.
Paraburkholderia caryophylli (Burkholder 1942) Sawana et al.
Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015
Paraburkholderia ginsengisoli (Kim et al. 2006) Sawana et al. 2015 (Kim et al. 2006) Sawana et al. 2015
Paraburkholderia glathei (Zolg and Ottow 1975) Sawana et al.
Paraburkholderia phenazinium (Bell and Turner 1973) Sawana et al.
Paraburkholderia phytofirmans (Sessitsch et al. 2005) Sawana et al.
Paraburkholderia sartisoli (Vanlaere et al. 2008) Sawana et al.
Paraburkholderia Sawana et al. 2015
Paraburkholderia sediminicola (Lim et al. 2008) Sawana et al. 2015
Paraburkholderia terricola (Goris et al. 2003) Sawana et al.
Paraburkholderia tropica (Reis et al. 2004) Sawana et al.
Paraburkholderia xenovorans (Goris et al. 2004) Sawana et al. 2015
Descriptions
The genus contains the type species B. cepacia (Yabuuchi et al., 1993). The species from this genus are gram-negative, straight or slightly curved rods, which exhibit motility mediated by one or more polar flagella. Only, B. mallei lacks flagella and is non-motile. The species do not produce sheaths or prosthecae and do not go through any resting stages. Most species are able to accumulate and utilize poly-β-hydroxybutyrate (PHB) for growth. The species are mostly aerobic chemoorganotrophs, but some species are capable of anaerobic respiration using nitrate as the terminal electron acceptor. The G+C content for the members of the genus ranges from 65.7 to 68.5%. The members of the genus form a distinct monophyletic clade in phylogenetic trees, and they are distinguished from all other bacteria by the conserved sequence indels reported in this work in the following proteins: Periplasmic amino acid-binding protein, 4-hydroxybenzoate 3-monooxygenase, 6-phosphogluconate dehydrogenase, Sarcosine oxidase subunit alpha, a putative lipoprotein, and a putative lyase (Table 2).
The genus contains the type species Paraburkholderia graminis comb. nov. (Basonym: Burkholderia graminis, Viallard et al., 1998) The species from this genus are gram-negative straight or slightly curved rods with one or more polar flagella. Other morphological and metabolic characteristics are similar to genus Burkholderia. The G+C content for the members of the genus ranges from 61.4 to 65.0%. The species are not associated with humans. The members of this genus generally form a distinct clade in the neighborhood of genus Burkholderia in phylogenetic trees, and they lack the molecular signatures which are specific for Burkholderia. Most of the sequenced members from this genus contain the conserved sequence indels reported in this work in the protein sequences of an unnamed dehydrogenase and a LysR family transcriptional regulator (Table 2).
Cited scientific names
- Burkholderia caledonica Coenye et al. 2001
- Burkholderia fungorum Coenye et al. 2001
- Burkholderia ginsengisoli Kim et al. 2006
- Burkholderia phenazinium (Bell and Turner 1973) Viallard et al. 1998
- Burkholderia phytofirmans Sessitsch et al. 2005
- Burkholderia sartisoli Vanlaere et al. 2008
- Burkholderia sediminicola Lim et al. 2008
- Burkholderia terricola Goris et al. 2003
- Burkholderia tropica Reis et al. 2004
- Burkholderia xenovorans Goris et al. 2004
- Burkholderia Yabuuchi et al. 1993
- Burkholderiaceae Garrity et al. 2006
- Paraburkholderia caledonica (Coenye et al. 2001) Sawana et al. 2015
- Paraburkholderia caryophylli (Burkholder 1942) Sawana et al. 2015
- Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015 2015
- Paraburkholderia ginsengisoli (Kim et al. 2006) Sawana et al. 2015
- Paraburkholderia glathei (Zolg and Ottow 1975) Sawana et al. 2015
- Paraburkholderia phenazinium (Bell and Turner 1973) Sawana et al. 2015
- Paraburkholderia phytofirmans (Sessitsch et al. 2005) Sawana et al. 2015
- Paraburkholderia sartisoli (Vanlaere et al. 2008) Sawana et al. 2015
- Paraburkholderia Sawana et al. 2015
- Paraburkholderia sediminicola (Lim et al. 2008) Sawana et al. 2015
- Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015
- Paraburkholderia tropica (Reis et al. 2004) Sawana et al. 2015
- Paraburkholderia xenovorans (Goris et al. 2004) Sawana et al. 2015 2015
Metadata
b1144659-00ee-48de-949b-a4fc8c916c6e
reference
Names_Fungi
3 April 2022
3 April 2022
